| Example | Description |
|---|---|
| ctatgcgacg | Intron or inter-gene bases |
| gtttaaagcc | TATA Box: Any instances of TATAAA, TTTAAA, TTTATA, TTATAA, TAATAA, TTAAAA, or TTTAAT found no more than 300 and no less than 8 bases upstream of the start of gene transcription. |
| Non-translated exon bases | |
| Reverse-complemented non-translated exon bases on the anti-sense strand | |
| Start Codon (based on the maximum-length Open Reading Frame from the ATG to any possible Stop Codon) | |
| ctctcaggag | Exon bases |
| ctcctgagag | Reverse complemented exon bases on the anti-sense strand |
| ctggcccaca | Highlighted base is the site of a SNP (Single Nucleotide Polymorphism). Hover over the SNP to see SNP information, click on it to access full details at NCBI. If a circumflex ^ is inserted to the right of a SNP then there is another SNP or functional class at the same address. These alternate colours indicate SNP insertions or deletions. |
| ctggtgagac | Splice Donor |
| gcaggtgctg | Splice Acceptor |
| gagtga | Stop Codon (TAG, TAA or TGA) |
| Poly A Tail: Whichever of AATAAA, ATTAAA, AGTAAA, ACTAAA, TATAAA is first encountered after the stop codon but within 30 bases upstream of the end of the mRNA. |
Generated 2007.05.09 at 15:12h by LocusAnnotator version 2.0(69), revised 2007.05.09
