Haugen, R.J., Barnier, C., Elrod, N.D., Luo, H., Jensen, M.K., Ji, P., Smibert, C.A., Lipshitz, H.D., Wagner, E.J., Freddolino, P.L., Goldstrohm, A.C. (2024) Regulation of he Drosophila transcriptome by Pumilio and the CCR4-NOT deadenylase. RNA 30: 866-890. 10.1261/rna.079813.123
Siddiqui, N.U., Karaiskakis, A., Goldman, A.L., Eagle, W.I.V., Low, T.C.H., Luo, H., Smibert, C.A., Gavis, E.L., Lipshitz, H.D. (2024) Smaug regulates germ plasm assembly and primordial germ cell number in Drosophila embryos. Science Advances 10(15) adg7894 https://www.science.org/doi/10.1126/sciadv.adg7894
Han, K., Wainberg, M., Calarco, J.A., Smibert, C.A., Lipshitz, H.D., Lee, H.O., Tripathy, S.J. (2023) BrainRBPedia: a resource for RNA-binding proteins relevant to neurodevelopmental disorders. https://doi.org/10.1101/2023.06.07.542483
Wood, V., Sternberg, P.W., Lipshitz, H.D. (2022) Making biological knowledge useful for humans and machines. Genetics 220(4), iyac001. https://academic.oup.com/genetics/article/220/4/iyac001/6563297
Cao, W.X., Karaiskakis, A., Lin, S., Angers, S., Lipshitz, H.D. (2022) The F-box protein Bard (CG14317) targets the Smaug RNA-binding protein for destruction during the Drosophila maternal-to-zygotic transition. Genetics 220(1), iyab177. https://academic.oup.com/genetics/article/220/1/iyab177/6404591?searchresult=1
Lipshitz, H.D. (2021) The Expression of the Emotions in Man and Fruit Flies. Genetics 219(1), iyab110. https://doi.org/10.1093/genetics/iyab110
Mohr, S., Kenny, A., Lam, S.T.Y., Morgan, M.B., Smibert, C.A., Lipshitz, H.D., Macdonald, P.M. (2021) Opposing roles for Egalitarian and Staufen in transport, anchoring and localization of oskar mRNA in the Drosophila oocyte. PLoS Genetics 17(4), e1009500. https//doi.org/10.1371/journal.pgen1009500
Lipshitz, H.D. (2021) The Descent of Databases. Genetics 217(3), iyab023. https://academic.oup.com/genetics/article/217/3/iyab023/6155230
Lipshitz, H.D. (2021) The Origin of GENETICS. Genetics 217(1), iyaa024. https://academic.oup.com/genetics/article/217/1/iyaa024/6128799
Cao, W.X., Kabelitz, S., Gupta, M., Yeung, E., Lin, S., Rammelt, C., Ihling, C., Pekovic, F., Low, T.C.H., Siddiqui, N.U., Cheng, M.H.K., Angers, S., Smibert, C.A., Wühr, M., Wahle, E., Lipshitz, H.D. (2020) Precise temporal regulation of post-transcriptional repressors is required for an orderly Drosophila maternal-to-zygotic transition. Cell Reports 31, 107783. (https://www.cell.com/cell-reports/fulltext/S2211-1247(20)30763-4).
Bruzzone, L., Argüelles, C., Sanial, M., Miled, S., Alvisi, G., Antunes, M., Qasrawi, F., Holmgren, R.A., Smibert, C.A., Lipshitz, H.D., Boccaccio, G.L., Plessis, A., Bécam, I. (2020) Regulation of the RNA-binding protein Smaug by the GPCR Smoothened via the kinase Fused. EMBO Reports, e48425.
Laver, J.D., Ly, J., Winn, A.K., Karaiskakis, A., Lin, S., Nie, K., Jaberi-Lashkari, N., Cao, W.X., Khademi, A., Westwood, J.T., Sidhu, S.S., Morris, Q., Angers, S., Smibert, C.A., Lipshitz, H.D. (2020) The RNA-binding protein, Rasputin/G3BP, enhances the stability and translation of its target mRNAs. Cell Reports 30, 3353-67. doi.org/10.1016/j.celrep.2020.02.066
Boycott KM, Campeau PM, Howley HE, Pavlidis P, Rogic S, Oriel C, Berman JN, Hamilton RM, Hicks GG, Lipshitz HD, Masson JY, Shoubridge EA, Junker A, Leroux M, McMaster CR, Michaud JL, Turvey SE, Dyment D, Innes AM, van Karnebeek CD, Lehman A, Cohn RD, MacDonald IM, Rachubinski RA, Frosk P, Vandersteen A, Wozniak RW, Pena IA, Wen XY, Lacaze-Masmonteil T, Rankin C, Hieter, P. (2020) The Canadian Rare Diseases Models and Mechanisms (RDMM) Network: Connecting Understudied Genes for Rare Diseases to Functional Characterization Research in Model Organisms. Am. J. Hum. Genet. 106, 143-152. 10.1016/j.ajhg.2020.01.009
Vastenhouw, N., Cao, W.-X., Lipshitz, H.D. (2019) The maternal-to-zygotic transition revisited. Development 146, dev161471. doi:10.1242/dev.161471 Pubmed
Rissland, O.S., Subtelny, A.O., Wang, M., Lugowski, A., Nicholson, B., Laver, J.D., Sidhu, S., Smibert, C.A., Lipshitz, H.D., Bartel, D.P. (2017) The influence of microRNAs and poly(A)-tail length on endogenous mRNA-protein complexes. Genome Biology 18, 211. Pubmed
Wang, M., Ly, M., Lugowski, A., Laver, J.D., Lipshitz, H.D., Smibert, C.A., Rissland, O.S. (2017) ME31B globally represses maternal mRNAs by two distinct mechanisms during the Drosophila maternal-to-zygotic transition. eLife 6, e27891. Pubmed.
Lipshitz, H.D., Claycomb, J.M., Smibert, C.A. (2017) Post-transcriptional regulation of gene expression. Methods 126, 1-2. Pubmed.
Luo, H., Li, X., Claycomb, J.M., Lipshitz, H.D. (2016) The Smaug RNA-binding protein is essential for microRNA synthesis during the Drosophila maternal-to-zygotic transition. G3:Genes|Genomes|Genetics 6, 3541-51. Pubmed.
Chen, Y.-C.A., Stuwe, E., Luo, Y., Ninova, M., Le Thomas, A., Rozhavskaya, E., Li, S., Vempati, S., Laver, J.D., Patel, D., Smibert, C.A., Lipshitz, H.D., Fejes Toth, K., Aravin, A.A. (2016) Cutoff suppresses RNA polymerase II termination to ensure expression of piRNA precursors. Molecular Cell 63, 97-109. Pubmed.
Na, H., Laver, J.D., Jeon, J., Singh, F., Ancevicius, K., Fan, Y., Cao, W.X., Nie, K., Yang, Z., Luo, H., Wang, M., Rissland, O., Westwood, J.T., Kim, P.M., Smibert, C.A., Lipshitz, H.D., Sidhu, S.S. (2016) A high-throughput pipeline for the production of synthetic antibodies for analysis of ribonucleoprotein complexes. RNA 22, 636-55. Pubmed
Amadei, G., Zander, M., Yang, G., Dumelie, J., Vessey, J.P., Lipshitz, H.D., Smibert, C.A., Kaplan, D., Miller, F. A. (2015) A Smaug2-based translational repression complex determines the balance between precursor maintenance versus differentiation during mammalian neurogenesis. Journal of Neuroscience 35, 15666-15681. Pubmed.
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Laver, J.D., Lipshitz, H.D. (2015) Transcription gets to the checkpoint. Cell 160, 1043-44. PubMed
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Herjan, T., Yao, P., Qian, W., Li, X., Liu, C., Bulek, K., Sun, D., Yang, W-P., Zhu, J., He, A., Carman, J., Ezurum, S., Lipshitz, H.D., Fox, P., Hamilton, T., Li, X. (2013) HuR is required for IL-17-induced Act1-mediated CXCL1 and CXCL5 mRNA stabilization. Journal of Immunology 191, 640-649. PubMed
Ray, D., Kazan, H., Cook, K.B., Weirauch, M.T., Najabafabadi, H.S., Li, X., Li, X., Albu, M., Zheng, H., Yang, A., Na, H., Guerrousov, S., Irinia, M., Matzat, L.H., Dale, R.K., Smith, S.A., Yarosh, C.A., Kelly, S.M., Nabet, B., Mecenas, D., Li, W., Laishram, R.S., Qiao, M., Lipshitz, H.D., Piano, F., Corbett, A.H., Carstens, R.R., Frey, B.J., Anderson, R.A., Lynch, K.W., Penalva, L.O.F., Lei, E.P., Blencowe, B.J., Fraser, A.G., Morris, Q.D., Hughes, T.R. (2013) A compendium of RNA-binding motifs for decoding gene regulation. Nature 499, 172-177. PubMed
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Laver, J., Ancevicius, K., Sollazzo, P., Westwood, J.T., Sidhu, S.S., Lipshitz, H.D., Smibert, C.A. (2012) Synthetic antibodies as tools to probe RNA-binding protein function. Molecular BioSystems 8, 1650-1657. PubMed
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Walser, C., Lipshitz, H.D. (2011) Maternal transcript clearance during the maternal-to-zygotic transition. Current Opinion in Genetics & Development 21, 431-443. PubMed
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Sing, A., Pannell, D., Karaiskakis, A., Sturgeon, K., Djabali, M., Ellis, J.R., Lipshitz, H.D., Cordes, S. (2009) A vertebrate Polycomb response element governs segmentation of the posterior hindbrain. Cell 138, 885-897. PubMed
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Lipshitz, H.D. (2009) Follow the mRNA: a new model for Bicoid gradient formation. Nature Reviews Molecular Cell Biology 10, 509-512. PubMed
Erclik, T., Hartenstein, V., McInnes, R.R., Lipshitz, H.D. (2009) Eye evolution at high resolution: the neuron as a unit of homology. Developmental Biology 332, 70-79. PubMed
Roth, F.S., Lipshitz, H.D., Andrews, B.J. (2009) Epistasis Q&A. Journal of Biology 8, 35.1-35.5. PubMed
Pickup, A.T., Ming, L., Lipshitz, H.D. (2009) Hindsight modulates Delta expression during Drosophila cone cell induction. Development 136, 975-982. PubMed
Benoit, B., He, C.H., Zhang,F., Votruba, S.M., Tadros, W., Westwood, J.T., Smibert, C.A., Lipshitz, H.D., Theurkauf, W.E. (2009) An essential role for the RNA-binding protein Smaug during the Drosophila maternal-to-zygotic transition. Development 136, 923-932. PubMed
Semotok, J.L., Luo, H., Cooperstock, R.L., Karaiskakis, A., Vari, H.K., Smibert, C.A., Lipshitz, H.D. (2008) Drosophila maternal Hsp83 mRNA destabilization is directed by multiple SMAUG recognition elements in the open reading frame. Molecular & Cellular Biology 28, 6757-6772. PubMed
Semotok, J.L., Westwood, J.T., Goldman, A.L., Cooperstock, R.L., Lipshitz, H.D. (2008) Measuring mRNA stability during early Drosophila embryogenesis. In: Methods in Enzymology: RNA Turnover, Part B, L.E. Maquat & M. Kiledjian (Editors), Elsevier, Vol. 448, Pp. 299-334 (Chapter 16). PubMed
Erclik, T., Hartenstein, V., Lipshitz, H.D., McInnes, R.R. (2008) Conserved role of the Vsx genes supports a monophyletic origin for bilaterian visual systems. Current Biology 18, 1278-1287. PubMed
Lipshitz, H.D. (2007) Lewis and the somatic effects of ionizing radiation. In: Lipshitz, H.D. (Editor) "Genes, Development & Cancer: The Life and Work of Edward B. Lewis", Second Edition (Revised & Expanded), Springer, Dordrecht. Pp. 415-431.
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Nelson, M.R., Luo, H., Cox, B.J., Simmonds, A.J., Krause, H.M., Lipshitz, H.D., Smibert, C.A. (2007) A multiprotein complex that mediates translational enhancement in Drosophila. Journal of Biological Chemistry 282, 34031-34038. PubMed
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Tadros, W., Goldman, A., Babak, T., Menzies, F., Vardy, L., Orr-Weaver, T., Hughes, T.R., Smibert, C.A., Westwood, J.T., Lipshitz, H.D. (2007) SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase. Developmental Cell 12, 143-155. PubMed
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Wilk, R., Pickup, A.T., Hamilton, J.K., Reed, B.H., and Lipshitz, H.D. (2004) Dose-sensitive autosomal modifiers identify candidate genes for tissue autonomous and tissue non-autonomous regulation by the Drosophila nuclear zinc-finger protein, Hindsight. Genetics 168, 281-300. PubMed
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Tadros, W., Houston, S.A., Bashirullah, A., Cooperstock, R.L., Semotok, J.L., Reed, B.H. and Lipshitz, H.D. (2003) Regulation of maternal transcript destabilization during egg activation in Drosophila. Genetics 164, 989-1001. PubMed
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Reed, B.A., Wilk, R. and Lipshitz, H.D. (2001) Downregulation of Jun kinase signaling in the amnioserosa is essential for dorsal closure of the Drosophila embryo. Current Biology 11, 1098-1108. PubMed
Bashirullah, A., Cooperstock, R.L. and Lipshitz, H.D. (2001) Spatial and temporal control of RNA stability. Proceedings of the National Academy of Sciences USA 98, 7025-7028. PubMed
Cooperstock, R.L. and Lipshitz, H.D. (2001) RNA localization and translational regulation during axis specification in the Drosophila oocyte. International Review of Cytology 203, 541-566. PubMed
Pannell, D., Osborne, C.S., Yao, S., Sukonnik, T., Pasceri, P., Karaiskakis, A., Okano, M., Li, E., Lipshitz, H.D. and Ellis, J. (2000) Gene silencing by MoMLV and HIV-1 vectors is de novo methylase-independent and marked by a repressive histone code. EMBO Journal 19, 5884-5894. PubMed
Lipshitz, H.D. and Smibert, C.A. (2000) Mechanisms of RNA localization and translational regulation. Current Opinion in Genetics & Development 10, 476-488. PubMed
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Wilk, R., Reed, B.H., Tepass, U. and Lipshitz, H.D. (2000) The hindsight gene is required for epithelial maintenance and differentiation of the tracheal system in Drosophila. Developmental Biology 219, 183-196. PubMed
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Lamka, M.L. and Lipshitz, H.D. (1999) The role of the amnioserosa in germ band retraction of the Drosophila melanogaster embryo. Developmental Biology 214, 102-112. PubMed
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Yip, M.L.R., Lamka, M.L. and Lipshitz, H.D. (1997) Control of germ band retraction in Drosophila by the Zinc-finger protein HINDSIGHT. Development 124, 2129-2141. PubMed
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Zaccai, M. and Lipshitz, H.D. (1996) Roles of Adducin-like (hu-li tai shao) mRNA and protein localization in regulating cytoskeletal structure and function during Drosophila oogenesis and early embryogenesis. Developmental Genetics 19, 249-257. PubMed
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Lipshitz, H.D. (1995) Introduction. In: Localized RNAs. (Lipshitz, H., Ed.) Molecular Biology Intelligence Unit. R.G. Landes Co., Austin, Texas. Pp. 1 - 8.
Lipshitz, H.D. (Editor) (1995) Localized RNAs. Molecular Biology Intelligence Unit. R.G. Landes Co., Austin, Texas/Springer, New York, 322 pp.
Ding, D. and Lipshitz, H.D. (1994) Spatially regulated expression of retrovirus-like transposons during Drosophila melanogaster embryogenesis. Genetical Research 64, 167-181. PubMed
Ding, D., Whittaker, K.L. and Lipshitz, H.D. (1994) Mitochondrially encoded 16S large ribosomal RNA is concentrated in the posterior polar plasm of early Drosophila embryos but is not required for pole cell formation. Developmental Biology 163, 503-515. PubMed
Ding, D. and Lipshitz, H.D. (1993) Localized RNAs and their functions. BioEssays 15, 651-658. PubMed
Ding, D. and Lipshitz, H.D. (1993) A molecular screen for polar-localized maternal RNAs in the early embryo of Drosophila. Zygote 1, 257-271. PubMed
Ding, D., Parkhurst, S.M., Halsell, S.R. and Lipshitz, H.D. (1993) Dynamic Hsp83 RNA localization during Drosophila oogenesis and embryogenesis. Molecular & Cellular Biology 13, 3773-3781. PubMed
Ding, D., Parkhurst, S.M. and Lipshitz, H.D. (1993) Different genetic requirements for anterior RNA localization revealed by the distribution of Adducin-like transcripts during Drosophila oogenesis. Proceedings of the National Academy of Sciences USA 90, 2512-2516. PubMed
Parkhurst, S.M., Lipshitz, H.D. and Ish-Horowicz, D. (1993) Achaete-scute feminizing activities and Drosophila sex-determination. Development 117, 737-749. PubMed
Strecker, T.R., Yip, M.-L.R. and Lipshitz, H.D. (1992) Genetic control of cell fate in the termini of the Drosophila embryo. Developmental Biology 150, 422-426. PubMed
Lipshitz, H.D. (1991) Axis specification in the Drosophila embryo. Current Opinion in Cell Biology 3, 966-975. PubMed
Strecker, T.R., Yip, M.-L. R. and Lipshitz, H.D. (1991) Zygotic genes that mediate torso receptor tyrosine kinase functions in the Drosophila embryo. Proceedings of the National Academy of Sciences USA 88, 5824-5828. PubMed
Strecker, T.R. and Lipshitz, H.D. (1990) Functions of the Drosophila terminal genes in establishing embryonic pattern. In: "Developmental Biology", UCLA Symposia on Molecular and Cellular Biology, New Series, Volume 125, Eds: E. Davidson, J. Ruderman, J. Posakony, Wiley-Liss, N.Y., Pp. 85-94.
Palazzolo, M.J., Hamilton, B.A., Ding, D., Martin, C.H., Mead, D.A., Mierendorf, R.C, Vijay Raghavan, K., Meyerowitz, E.M. and Lipshitz, H.D. (1990) Phage lambda cDNA cloning vectors for subtractive hybridization, fusion protein expression and Cre-loxP automatic plasmid subcloning. Gene 88, 25-36. PubMed
Strecker, T.R., Halsell, S.R., Fisher, W.W. and Lipshitz, H.D. (1989) Reciprocal effects of hyper- and hypoactivity mutations in the Drosophila pattern gene torso. Science 243, 1062-1066. PubMed
Thummel, C.S., Boulet, A. M. and Lipshitz, H.D. (1988) Vectors for Drosophila P-element-mediated transformation and tissue culture transfection. Gene 74, 445-456. PubMed
Lipshitz, H.D., Peattie, D.A. and Hogness, D.S. (1987) Novel transcripts from the Ultrabithorax domain of the bithorax complex. Genes & Development 1, 307-322. PubMed
Hogness, D.S., Lipshitz, H.D., Beachy, P.A., Peattie, D.A., Saint, R.B., Goldschmidt-Clermont, M., Harte, P.J., Gavis, E.R., Helfand, S.L. (1985) Regulation and products of the Ubx domain of the bithorax complex. Cold Spring Harbor Symposia on Quantitative Biology 50, 181-194. PubMed
Lipshitz, H.D. and Kankel, D.R. (1985) Specificity of gene action during central nervous system development in Drosophila melanogaster: analysis of the lethal (1) optic ganglion reduced locus. Developmental Biology 108, 56-77. PubMed
Lipshitz, H.D. and Kankel, D.R. (1985) Developmental interactions between the peripheral and central nervous system in Drosophila melanogaster: analysis of the mutant, two-faced. Developmental Biology 107, 1-12. PubMed
Kankel, D.R. and Lipshitz, H.D. (1981) Allelic variability at loci affecting the development and function of the visual system. In: "Genetic Dissection of Behavior in Drosophila", Proc. Seventh International Symposium, Division of Physics, Tanaguchi Foundation, Japan (Ed.: Y. Hotta), Pp. 215-238.
Lipshitz, H.D., Berjak, P., Pammenter, N.W., and Davey, J.E. (1975) A note on the apparent redistribution of crabs in the Saco mangrove swamp, Inhaca Island, Mocambique. South African Journal of Science 71, 55-57. [Note: Surname was misspelled as Lipschitz in the journal.]